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Pull requests: malariagen/malariagen-data-python

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Pull requests list

replacing old '%' with newer f-string
#891 opened Feb 21, 2026 by blankirigaya Loading…
1
Fix deprecated Plotly API calls in anoph (Mapbox and Trace methods)
#889 opened Feb 21, 2026 by NgangaKamau3 Loading…
fix(tests): handle missing sex_call in diplotype clustering tests for Amin1/Adir1
#888 opened Feb 20, 2026 by adilraza99 Loading…
1
fix: use _gff_gene_name_attribute in _transcript_to_parent_name (#883)
#887 opened Feb 20, 2026 by 31puneet Loading…
1
1
docs: add macOS developer setup guide
#885 opened Feb 20, 2026 by PaulaYaniz Loading…
1
2
fix: replace mutable default arguments with None in CNV plot functions
#884 opened Feb 20, 2026 by PaulaYaniz Loading…
1
2
Fix plot_frequencies_time_series reading wrong cohort after filtering
#879 opened Feb 20, 2026 by blankirigaya Loading…
1
2
Add quick start section to README
#877 opened Feb 20, 2026 by blankirigaya Loading…
2
Fix hardcoded gene type and name attribute in test_plot_genes_with_ge…
#875 opened Feb 20, 2026 by 31puneet Loading…
1
Fix broken DOI link and docstring typos
#874 opened Feb 20, 2026 by Vedag812 Loading…
1
Fix TypeError for single-exon transcripts in veff.Annotator.get_children
#873 opened Feb 20, 2026 by Vedag812 Loading…
1
Add AI-use policy
#872 opened Feb 20, 2026 by jonbrenas Loading…
Update contact details in pyproject.toml
#871 opened Feb 20, 2026 by jonbrenas Loading…
Fix g123 test failures on Adir1/Amin1 by falling back to segregating sites when no phasing analysis is available
#870 opened Feb 20, 2026 by blankirigaya Loading…
1
6
Improve plot_njt errors for insufficient data
#869 opened Feb 20, 2026 by Aryan-SINGH-GIT Loading…
1
Add comprehensive CONTRIBUTING.md guide for new contributors
#860 opened Feb 12, 2026 by adilraza99 Loading…
1
8
Fix pandas chained indexing to restore NumPy 2.x compatibility
#854 opened Feb 2, 2026 by adilraza99 • Draft
1
Fix CI ValueError on NumPy 2.x by avoiding VLENUTF8 string dtype in tests
#853 opened Feb 1, 2026 by adilraza99 • Draft
1
6
Fix ValueErrors
#850 opened Jan 23, 2026 by leehart • Draft
Amend numpy-version for test matrix triage
#849 opened Jan 23, 2026 by leehart • Draft
@ahernank @jonbrenas
1
Update Bokeh triage
#846 opened Jan 16, 2026 by leehart • Draft
@ahernank @jonbrenas
7
Avoid segmentation fault errors during CI tests triage
#842 opened Jan 13, 2026 by leehart • Draft
@ahernank @jonbrenas
13
Fix phenotype data path construction and remove hardcoded release version
#818 opened Sep 7, 2025 by Aditya365x Loading…
add advanced haplotype clustering
#817 opened Sep 5, 2025 by sanjaynagi Loading…
2 tasks done
17
Feature/794 canonical transcript
#804 opened Jun 26, 2025 by mohamed-laarej Loading…
10
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