sequencing_pipe

Sequencing Pipelines

Contains both the BCL2FASTQ pipelines and Dragen alignment pipelines for the Columbia University Medical Center's Institute for Genomic Medicine.

Name		Name	Last commit message	Last commit date
Latest commit History 368 Commits
Align		Align
bam_vcf		bam_vcf
external		external
misc		misc
.gitignore		.gitignore
DP1KbBins_rc1.cpp		DP1KbBins_rc1.cpp
GoButton		GoButton
GoButton.cpp		GoButton.cpp
GoButton.pm		GoButton.pm
README.md		README.md
check_lane_data.py		check_lane_data.py
clean_flowcell_from_scratch.py		clean_flowcell_from_scratch.py
config.ini		config.ini
create_align_config.py		create_align_config.py
db_statements.py		db_statements.py
delete.py		delete.py
delete.txt		delete.txt
dragen_pipe.py		dragen_pipe.py
dragen_pipe2.py		dragen_pipe2.py
dragen_sample.py		dragen_sample.py
makefile		makefile
makefile.original		makefile.original
populate_waldb_id_hist_v2.py		populate_waldb_id_hist_v2.py
set_pool_releasable.py		set_pool_releasable.py
sym_link_creator.py		sym_link_creator.py
utilities.py		utilities.py
utils.py		utils.py