Develop

.editorconfig

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+# EditorConfig is awesome: https://EditorConfig.org
+# This file defines consistent coding styles for GOSS project
+# Supported by VS Code, IntelliJ IDEA, Eclipse, and many other editors
+
+root = true
+
+# All files
+[*]
+charset = utf-8
+end_of_line = lf
+insert_final_newline = true
+trim_trailing_whitespace = true
+indent_style = tab
+tab_width = 4
+
+# Java files
+[*.java]
+indent_style = tab
+indent_size = 4
+tab_width = 4
+max_line_length = 120
+continuation_indent_size = 8
+
+# Gradle files
+[*.gradle]
+indent_style = tab
+indent_size = 4
+tab_width = 4
+
+# Properties files
+[*.{properties,cfg}]
+indent_style = space
+indent_size = 4
+
+# BND files
+[*.{bnd,bndrun}]
+indent_style = tab
+indent_size = 4
+tab_width = 4
+
+# Markdown files
+[*.{md,markdown}]
+indent_style = space
+indent_size = 2
+trim_trailing_whitespace = false
+
+# YAML files (GitHub Actions, etc.)
+[*.{yml,yaml}]
+indent_style = space
+indent_size = 2
+
+# JSON files
+[*.json]
+indent_style = space
+indent_size = 2
+
+# XML files
+[*.xml]
+indent_style = space
+indent_size = 2
+
+# Shell scripts
+[*.{sh,bash}]
+indent_style = space
+indent_size = 2
+
+# Travis CI (legacy - keeping for reference)
+[.travis.yml]
+indent_style = space
+indent_size = 2

.github/codeql/codeql-config.yml

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+name: "GOSS CodeQL Configuration"
+
+queries:
+  - name: security-and-quality
+    uses: security-and-quality
+  - name: security-extended
+    uses: security-extended
+
+# Paths to analyze
+paths:
+  - pnnl.goss.core/src
+  - pnnl.goss.core.runner/src
+  - pnnl.goss.core.testutil/src
+  - pnnl.goss.core.itests/src
+
+# Paths to ignore
+paths-ignore:
+  - "**/generated/**"
+  - "**/target/**"
+  - "**/build/**"
+  - "**/*.log"
+  - "**/cache/**"
+  - "**/releaserepo/**"
+  - "**/test/**/*.java" # Focus on main source code
+
+# Disable queries that may produce too many false positives
+disable-default-queries: false
+
+# Additional packs for enhanced security analysis
+packs:
+  - codeql/java-queries:AlertSuppression.ql
+  - codeql/java-queries:Security/CWE
+  - codeql/java-queries:Security/CWE/CWE-078.ql  # OS Command Injection
+  - codeql/java-queries:Security/CWE/CWE-089.ql  # SQL Injection
+  - codeql/java-queries:Security/CWE/CWE-798.ql  # Hard-coded credentials

.github/workflows/ci.yml

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+name: CI/CD Pipeline
+
+on:
+  push:
+    branches: [ main, master, develop, upstream_develop ]
+  pull_request:
+    branches: [ main, master, develop ]
+  schedule:
+    # Run tests weekly on Sundays at 2 AM UTC
+    - cron: '0 2 * * 0'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    name: Test Suite
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        java-version: [21, 22]
+        include:
+          - java-version: 21
+            primary: true
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+      with:
+        fetch-depth: 0  # Full history for better analysis
+
+    - name: Set up JDK ${{ matrix.java-version }}
+      uses: actions/setup-java@v4
+      with:
+        java-version: ${{ matrix.java-version }}
+        distribution: 'temurin'
+        cache: gradle
+
+    - name: Cache Gradle dependencies
+      uses: actions/cache@v4
+      with:
+        path: |
+          ~/.gradle/caches
+          ~/.gradle/wrapper
+          cnf/cache
+        key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle*', '**/gradle-wrapper.properties', 'cnf/**/*.bnd') }}
+        restore-keys: |
+          ${{ runner.os }}-gradle-
+
+    - name: Make gradlew executable
+      run: chmod +x gradlew
+
+    - name: Validate Gradle Wrapper
+      uses: gradle/wrapper-validation-action@v2
+
+    - name: Run unit tests
+      run: ./gradlew test --continue --no-daemon
+      env:
+        GRADLE_OPTS: -Xmx2g -Dorg.gradle.daemon=false
+
+    - name: Run integration tests (non-OSGi)
+      run: ./gradlew check -x :pnnl.goss.core.itests:testOSGi --continue --no-daemon
+      env:
+        GRADLE_OPTS: -Xmx2g -Dorg.gradle.daemon=false
+
+    - name: Build project
+      run: ./gradlew build -x :pnnl.goss.core.itests:testOSGi --no-daemon
+      env:
+        GRADLE_OPTS: -Xmx2g -Dorg.gradle.daemon=false
+
+    - name: Generate test report
+      uses: dorny/test-reporter@v1
+      if: success() || failure()
+      with:
+        name: Test Results (JDK ${{ matrix.java-version }})
+        path: '**/generated/test-results/test/TEST-*.xml'
+        reporter: java-junit
+        fail-on-error: false
+
+    - name: Upload test results
+      if: always()
+      uses: actions/upload-artifact@v4
+      with:
+        name: test-results-jdk${{ matrix.java-version }}
+        path: |
+          **/generated/test-results/
+          **/generated/reports/
+        retention-days: 30
+
+    - name: Upload build artifacts (primary JDK only)
+      if: matrix.primary && (success() || failure())
+      uses: actions/upload-artifact@v4
+      with:
+        name: build-artifacts
+        path: |
+          **/generated/*.jar
+          cnf/releaserepo/**/*.jar
+        retention-days: 90
+
+  osgi-integration-tests:
+    name: OSGi Integration Tests
+    runs-on: ubuntu-latest
+    needs: test
+    if: github.event_name != 'schedule' # Skip on scheduled runs
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Set up JDK 21
+      uses: actions/setup-java@v4
+      with:
+        java-version: 21
+        distribution: 'temurin'
+        cache: gradle
+
+    - name: Make gradlew executable
+      run: chmod +x gradlew
+
+    - name: Run OSGi integration tests
+      run: ./gradlew :pnnl.goss.core.itests:testOSGi --no-daemon || true
+      env:
+        GRADLE_OPTS: -Xmx2g -Dorg.gradle.daemon=false
+
+    - name: Upload OSGi test results
+      if: always()
+      uses: actions/upload-artifact@v4
+      with:
+        name: osgi-test-results
+        path: |
+          pnnl.goss.core.itests/generated/test-results/
+          pnnl.goss.core.itests/generated/reports/
+          pnnl.goss.core.itests/**/*.log
+        retention-days: 30
+
+  build-runners:
+    name: Build OSGi Runners
+    runs-on: ubuntu-latest
+    needs: test
+    if: github.event_name != 'schedule'
+
+    steps:
+    - name: Checkout code
+      uses: actions/checkout@v4
+
+    - name: Set up JDK 21
+      uses: actions/setup-java@v4
+      with:
+        java-version: 21
+        distribution: 'temurin'
+        cache: gradle
+
+    - name: Make gradlew executable
+      run: chmod +x gradlew
+
+    - name: Build all GOSS bundles
+      run: ./gradlew :pnnl.goss.core:jar --no-daemon
+      env:
+        GRADLE_OPTS: -Xmx2g -Dorg.gradle.daemon=false
+
+    - name: Build OSGi runners using BndRunnerPlugin
+      run: |
+        ./gradlew buildRunner.goss-core --no-daemon
+        ./gradlew buildRunner.goss-core-ssl --no-daemon
+      env:
+        GRADLE_OPTS: -Xmx2g -Dorg.gradle.daemon=false
+
+    - name: Verify runner JARs created
+      run: |
+        ls -lh pnnl.goss.core.runner/generated/runners/
+        test -f pnnl.goss.core.runner/generated/runners/goss-core-runner.jar
+        test -f pnnl.goss.core.runner/generated/runners/goss-core-ssl-runner.jar
+        echo "✅ All runner JARs built successfully"
+
+    - name: Upload runner artifacts
+      if: success()
+      uses: actions/upload-artifact@v4
+      with:
+        name: osgi-runners
+        path: pnnl.goss.core.runner/generated/runners/*.jar
+        retention-days: 30
+
+  build-status:
+    name: Build Status
+    runs-on: ubuntu-latest
+    needs: [test, osgi-integration-tests, build-runners]
+    if: always()
+
+    steps:
+    - name: Check build status
+      run: |
+        echo "Test job status: ${{ needs.test.result }}"
+        echo "OSGi job status: ${{ needs.osgi-integration-tests.result }}"
+        echo "Build runners job status: ${{ needs.build-runners.result }}"
+
+        if [[ "${{ needs.test.result }}" == "success" ]] && [[ "${{ needs.build-runners.result }}" == "success" ]]; then
+          echo "✅ Core build, tests, and runners passed!"
+          exit 0
+        else
+          echo "❌ Build, tests, or runners failed"
+          exit 1
+        fi