Our pipeline is made up of three main steps: 1. Patient Creation (./patient_creation), 2. Transcript Generation (./transcript_generation), and 3. Analysis (./analysis).
To set up the environment, navigate to this directory in the terminal (Linux/Mac) or on Anaconda Prompt (Windows) and enter these commands:
conda env create -f patient_creator_environment.yml
To activate the environment, make sure to call this command first:
conda activate patient_creator_environment
To run the notebooks:
jupyter notebook