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* `dbases.xml` was not found when I was running, it and I realized this is the file on the PubMLST site. * It was not clear until I read the code that all the statements are printed to the screen and so I put in a usage statement.
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@lskatz it seems i missed this for 9 years :-( I am confused about what it is doing. |
Author
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Oh wow I forgot about this! It would provide coordinates of where each locus is found in the query genome. |
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I added an option
--gffto create a GFF file describing where each locus is in the query genome. Optimally, I would like a gbk file, but I chose to go with gff so that it doesn't add a BioPerl requirement. However, I did add someusestatements for some core modules.