A comprehensive platform for analyzing microbiome data from the LucKi cohort, featuring machine learning models for age group prediction from gut microbiome taxonomic profiles. The platform includes both interactive Streamlit web application and Jupyter notebook-based analysis.
A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
Integrated 16S + shotgun metagenomics workflow for kvass fermentation (QIIME2, MetaPhlAn4, Kraken2, HUMAnN3, DRAM2) with reproducible outputs.
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