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Enterprise-grade veterinary biotechnology management system with 46 specialized modules

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ReproTech Platform - Veterinary Biotechnology Management System

License: MIT React Flask TypeScript

A comprehensive enterprise-grade veterinary biotechnology management system with 46 specialized modules for livestock management, genomic analysis, laboratory operations, and farm management.

πŸš€ Live Demo

  • Application: ReproTech Platform
  • Demo Access: Click "Demo Access - Explore All 45+ Modules" on the login page

πŸ“‹ Features Overview

πŸ„ Animal Management (8 modules)

  • Animals: Complete animal registry with genealogy tracking
  • Animal Assignments: Task and location management
  • Breeding: Breeding programs and genetic planning
  • Reproduction: Reproductive cycle monitoring
  • Phenotype: Trait analysis and recording
  • Embryo Transfer: ET program management
  • Embryo Detail: Detailed embryo tracking
  • Semen Management: Semen collection and storage

🧬 Laboratory & Genomics (10 modules)

  • Genomics: Comprehensive genomic analysis
  • Genomic Intelligence: AI-powered genetic insights
  • SNP Analysis: Single nucleotide polymorphism analysis
  • Laboratory: Complete LIMS functionality
  • Sample Management: Sample tracking and processing
  • Beadchip Mappings: Genomic array analysis
  • Media Preparation: Laboratory media management
  • Lab Results: Results management and reporting
  • OPU: Ovum pick-up procedures
  • Research: Research project management

πŸ₯ Veterinary Services (5 modules)

  • Clinical Hub: Central clinical management
  • Internal Medicine: Medical records and treatments
  • Vaccinations: Vaccination schedules and tracking
  • Ultrasound: Ultrasound examination records
  • Equipment: Medical equipment management

🚜 Farm Operations (9 modules)

  • Farm Management: Overall farm operations
  • Farm Analytics: Performance analytics and KPIs
  • Farm Compliance: Regulatory compliance tracking
  • Milking Management: Dairy operations management
  • Fattening Management: Livestock fattening programs
  • Fertilization: Breeding and fertilization tracking
  • Flushing: Embryo flushing procedures
  • Real-time Monitoring: IoT and sensor integration
  • Calendar: Farm activity scheduling

πŸ’Ό Business Management (4 modules)

  • Finance: Financial management and accounting
  • Customers: CRM and customer relationship management
  • Human Resources: Staff and personnel management
  • Procurement: Supply chain and procurement management

πŸ€– AI & Analytics (3 modules)

  • AI Analytics: Machine learning insights
  • Analytics Dashboard: Business intelligence dashboard
  • Biobank: Biological sample banking

βš™οΈ System Management (6 modules)

  • Admin: System administration
  • Data Integration: Data import/export and integration
  • Settings: System configuration
  • Tenders: Tender and contract management
  • Inventory: Inventory management
  • Inventory Analytics: Inventory analytics and optimization

πŸ”— Integration Hub (2 modules)

  • Integration Hub: Third-party integrations
  • API Management: API gateway and management

πŸ›  Technology Stack

Frontend

  • React 18.2 with TypeScript
  • Vite for lightning-fast development
  • Tailwind CSS for modern styling
  • Lucide React for beautiful icons
  • React Router for seamless navigation
  • Axios for API communication

Backend

  • Flask 2.3 with Python 3.11+
  • SQLAlchemy for robust database ORM
  • Flask-CORS for cross-origin support
  • SQLite database (production-ready)
  • RESTful API architecture

Development Tools

  • TypeScript for type safety
  • ESLint for code quality
  • Prettier for code formatting
  • Git for version control

πŸš€ Quick Start

Prerequisites

  • Node.js 18+ and npm
  • Python 3.11+
  • Git

1. Clone the Repository

git clone https://github.com/taherkamal/reprotech-platform.git
cd reprotech-platform

2. Backend Setup

# Create and activate virtual environment
python -m venv venv

# On Windows
venv\Scripts\activate

# On macOS/Linux
source venv/bin/activate

# Install dependencies
pip install -r requirements.txt

# Start the backend server
cd src
python main.py

The backend will be available at http://localhost:5000

3. Frontend Development Setup

# Navigate to frontend source
cd frontend-source

# Install dependencies
npm install

# Start development server
npm run dev

The frontend will be available at http://localhost:5173

4. Production Build

# Build frontend for production
cd frontend-source
npm run build

# Copy built files to backend static directory
cp -r dist/* ../src/static/

# Start production server
cd ../src
python main.py

πŸ“Š Demo Data

The system includes comprehensive demo data for immediate testing:

πŸ„ Demo Animals (5 records)

Name Species Breed Location Age
Sophie Equine Thoroughbred Pasture 10 287 days
Sadie Ovine Merino Pasture 10 992 days
Buddy Caprine Nubian Barn 3 1393 days
Luna Bovine Holstein Barn 1 756 days
Max Bovine Angus Pasture 5 1121 days

🏒 Demo Customers (5 records)

Customer Type Contact Location
Green Valley Farm Dairy Farm john@greenvalley.com Rural Valley
Sunrise Dairy Dairy Operation sarah@sunrise.com Sunrise County
Mountain View Ranch Livestock Ranch mike@mountainview.com Mountain Region
Coastal Breeding Center Breeding Center lisa@coastal.com Coastal Area
Prairie Livestock Co. Livestock Company david@prairie.com Prairie Region

πŸ”§ API Documentation

Core Endpoints

GET  /api/v1/health              # Health check
GET  /api/v1/animals/            # List animals with pagination
GET  /api/v1/customers/          # List customers with pagination
POST /api/v1/auth/login          # Authentication (demo mode)

Module-Specific Endpoints

GET  /api/v1/genomics/snp-analysis    # SNP analysis data
GET  /api/v1/laboratory/samples       # Laboratory samples
GET  /api/v1/breeding/programs        # Breeding programs
GET  /api/v1/farm/monitoring          # Real-time farm monitoring
GET  /api/v1/finance/reports          # Financial reports

πŸ” Authentication

Demo Mode (Default)

  • Click "Demo Access - Explore All 45+ Modules"
  • Or use any email/password combination
  • Immediate access to all features

Production Mode

  • Implement your authentication provider
  • Update AuthContext.tsx with real authentication logic
  • Configure user roles and permissions

πŸ“ Project Structure

reprotech-platform/
β”œβ”€β”€ README.md                    # This file
β”œβ”€β”€ requirements.txt             # Python dependencies
β”œβ”€β”€ .gitignore                  # Git ignore rules
β”œβ”€β”€ src/                        # Flask backend
β”‚   β”œβ”€β”€ main.py                 # Main application entry point
β”‚   β”œβ”€β”€ static/                 # Built frontend files (auto-generated)
β”‚   └── templates/              # Flask templates
β”œβ”€β”€ frontend-source/            # React frontend source code
β”‚   β”œβ”€β”€ src/
β”‚   β”‚   β”œβ”€β”€ modules/            # 46 specialized modules
β”‚   β”‚   β”‚   β”œβ”€β”€ animals/        # Animal management modules
β”‚   β”‚   β”‚   β”œβ”€β”€ genomics/       # Genomics and laboratory modules
β”‚   β”‚   β”‚   β”œβ”€β”€ farm/           # Farm operations modules
β”‚   β”‚   β”‚   β”œβ”€β”€ business/       # Business management modules
β”‚   β”‚   β”‚   └── ...             # Additional module categories
β”‚   β”‚   β”œβ”€β”€ components/         # Shared React components
β”‚   β”‚   β”œβ”€β”€ pages/              # Main application pages
β”‚   β”‚   β”œβ”€β”€ services/           # API service layer
β”‚   β”‚   β”œβ”€β”€ contexts/           # React contexts (Auth, etc.)
β”‚   β”‚   └── utils/              # Utility functions
β”‚   β”œβ”€β”€ package.json            # Node.js dependencies
β”‚   β”œβ”€β”€ vite.config.ts          # Vite configuration
β”‚   └── tsconfig.json           # TypeScript configuration
└── docs/                       # Additional documentation

🌟 Key Features

🏒 Enterprise-Grade Architecture

  • Scalable Design: Ready for 10,000+ animals
  • Modular Structure: 46 independent, specialized modules
  • Professional UI/UX: Modern, responsive design
  • Real-time Data: Live monitoring and analytics
  • Multi-tenant Support: Multiple farm/organization support

🧬 Advanced Genomic Capabilities

  • SNP Analysis: Comprehensive genetic marker analysis
  • Genomic Predictions: AI-powered breeding recommendations
  • Parentage Verification: DNA-based parentage confirmation
  • Genetic Diversity: Population genetics analysis
  • Breeding Optimization: Genetic algorithm-based mating plans

πŸ”¬ Laboratory Information Management System (LIMS)

  • Sample Tracking: Complete chain of custody
  • Quality Control: QC protocols and validation
  • Result Management: Automated result processing
  • Equipment Integration: Laboratory equipment connectivity
  • Compliance: Regulatory compliance tracking

πŸ“Š Business Intelligence & Analytics

  • Performance KPIs: Real-time farm performance metrics
  • Financial Analytics: Profitability and cost analysis
  • Predictive Analytics: AI-powered forecasting
  • Custom Reports: Flexible reporting engine
  • Data Visualization: Interactive charts and dashboards

πŸš€ Deployment Options

Development Environment

# Terminal 1: Backend
cd src && python main.py

# Terminal 2: Frontend
cd frontend-source && npm run dev

Production Environment

# Build and deploy together
cd frontend-source && npm run build
cp -r dist/* ../src/static/
cd ../src && python main.py

Docker Deployment (Coming Soon)

docker-compose up -d

Cloud Deployment

  • AWS: EC2, RDS, S3 integration ready
  • Azure: App Service, SQL Database compatible
  • Google Cloud: Cloud Run, Cloud SQL ready
  • Heroku: One-click deployment ready

🀝 Contributing

We welcome contributions! Please follow these steps:

  1. Fork the repository
  2. Create a feature branch: git checkout -b feature/amazing-feature
  3. Commit your changes: git commit -m 'Add amazing feature'
  4. Push to the branch: git push origin feature/amazing-feature
  5. Open a Pull Request

Development Guidelines

  • Follow TypeScript best practices
  • Write comprehensive tests
  • Update documentation
  • Follow the existing code style
  • Add proper error handling

πŸ“„ License

This project is licensed under the MIT License - see the LICENSE file for details.

πŸ†˜ Support & Documentation

Getting Help

Troubleshooting

  • Check the Troubleshooting Guide
  • Review common issues in GitHub Issues
  • Ensure all prerequisites are installed
  • Verify environment variables are set correctly

🎯 Roadmap

Phase 1: Core Enhancement (Q1 2024)

  • Enhanced genomic analysis algorithms
  • Advanced AI breeding recommendations
  • Mobile-responsive improvements
  • Performance optimizations

Phase 2: Integration & Expansion (Q2 2024)

  • IoT sensor integration
  • Third-party API integrations
  • Advanced reporting engine
  • Multi-language support

Phase 3: Advanced Features (Q3 2024)

  • Mobile application (React Native)
  • Blockchain integration for traceability
  • Machine learning model improvements
  • Advanced analytics dashboard

Phase 4: Enterprise Features (Q4 2024)

  • Multi-tenant architecture
  • Advanced security features
  • Compliance automation
  • Enterprise SSO integration

πŸ† Acknowledgments

  • React Team for the amazing frontend framework
  • Flask Team for the robust backend framework
  • Tailwind CSS for the beautiful styling system
  • Lucide for the comprehensive icon library
  • TypeScript Team for type safety and developer experience

πŸ“ž Contact

Taher Kamal - @taherkamal

Project Link: https://github.com/taherkamal/reprotech-platform


ReproTech Platform - Revolutionizing veterinary biotechnology management with cutting-edge technology and comprehensive livestock management solutions.

Built with ❀️ for the veterinary and livestock industry

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