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@saalfeldlab

Saalfeld Lab

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  1. n5 n5 Public

    Not HDF5

    Java 197 24

  2. paintera paintera Public

    Java 112 19

  3. render render Public

    Render transformed image tiles

    Java 35 33

  4. bigwarp bigwarp Public

    A tool for manual pointwise deformable registration using bigdataviewer.

    Java 35 14

  5. stitching-spark stitching-spark Public

    Reconstruct big images from overlapping tiled images on a Spark cluster.

    Java 34 10

  6. n5-viewer n5-viewer Public

    BigDataViewer-based tool for visualizing multichannel multiscale N5 datasets.

    Java 19 12

Repositories

Showing 10 of 112 repositories
  • NeuralGraph Public
    saalfeldlab/NeuralGraph’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 14, 2026
  • n5-universe Public

    Functionality shared across all n5

    saalfeldlab/n5-universe’s past year of commit activity
    Java 1 BSD-2-Clause 6 10 5 Updated Feb 13, 2026
  • n5-aws-s3 Public

    N5 library implementation using Amazon Web Services S3 backend.

    saalfeldlab/n5-aws-s3’s past year of commit activity
    Java 5 BSD-2-Clause 7 3 1 Updated Feb 13, 2026
  • n5-ij Public

    ImageJ convenience layer for N5

    saalfeldlab/n5-ij’s past year of commit activity
    Java 19 BSD-2-Clause 13 29 (1 issue needs help) 3 Updated Feb 12, 2026
  • n5-zarr Public

    Zarr filesystem backend for N5

    saalfeldlab/n5-zarr’s past year of commit activity
    Java 19 BSD-2-Clause 18 10 4 Updated Feb 12, 2026
  • n5-google-cloud Public

    N5 library implementation using Google Cloud Storage backend.

    saalfeldlab/n5-google-cloud’s past year of commit activity
    Java 1 BSD-2-Clause 3 2 0 Updated Feb 12, 2026
  • n5-hdf5 Public

    Best effort N5 implementation on HDF5 files (despite the irony).

    saalfeldlab/n5-hdf5’s past year of commit activity
    Java 7 BSD-2-Clause 11 4 2 Updated Feb 11, 2026
  • n5 Public

    Not HDF5

    saalfeldlab/n5’s past year of commit activity
    Java 197 BSD-2-Clause 24 24 5 Updated Feb 11, 2026
  • neural-gnn Public
    saalfeldlab/neural-gnn’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Feb 11, 2026
  • ParticleGraph Public

    Graph fitting particle trajectories

    saalfeldlab/ParticleGraph’s past year of commit activity
    Python 1 2 0 0 Updated Feb 11, 2026
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