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Updated project structure #13

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50 changes: 5 additions & 45 deletions .gitignore
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@@ -1,45 +1,5 @@
*.class

# Mobile Tools for Java (J2ME)
.mtj.tmp/

# Package Files #
*.jar
*.war
*.ear

# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
hs_err_pid*

*.pydevproject
.metadata
.gradle
bin/
tmp/
*.tmp
*.bak
*.swp
*~.nib
local.properties
.settings/
.loadpath

# External tool builders
.externalToolBuilders/

# Locally stored "Eclipse launch configurations"
*.launch

# CDT-specific
.cproject

# PDT-specific
.buildpath

# sbteclipse plugin
.target

# TeXlipse plugin
.texlipse

*/target/*
.project
.settings/*
**/.classpath
*/bin/
*/target/*
40 changes: 0 additions & 40 deletions GraphDrawingTheory/.classpath
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44 changes: 0 additions & 44 deletions GraphDrawingTheory/.gitignore
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23 changes: 0 additions & 23 deletions GraphDrawingTheory/.project
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140 changes: 69 additions & 71 deletions GraphDrawingTheory/pom.xml
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@@ -1,73 +1,71 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>GraphDrawingTheory</groupId>
<artifactId>GraphDrawingTheory</artifactId>
<version>0.1.0-SNAPSHOT</version>
<build>
<sourceDirectory>src</sourceDirectory>
<testSourceDirectory>test</testSourceDirectory>
<plugins>
<plugin>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>org.tinyjee.jgraphx</groupId>
<artifactId>jgraphx</artifactId>
<version>3.4.1.3</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
<version>1.2.17</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.prefuse</groupId>
<artifactId>prefuse</artifactId>
<version>beta-20071021</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>gov.nist.math</groupId>
<artifactId>jama</artifactId>
<version>1.0.3</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-visualization</artifactId>
<version>2.0.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-algorithms</artifactId>
<version>2.0.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-graph-impl</artifactId>
<version>2.0.1</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.python</groupId>
<artifactId>jython-standalone</artifactId>
<version>2.7.1b2</version>
<scope>compile</scope>
</dependency>

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">

</dependencies>

<parent>
<artifactId>GraphDrawing</artifactId>
<groupId>GraphDrawing</groupId>
<version>0.1.0-SNAPSHOT</version>
<relativePath>..</relativePath>
</parent>

<modelVersion>4.0.0</modelVersion>
<groupId>GraphDrawingTheory</groupId>
<artifactId>GraphDrawingTheory</artifactId>

<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>
<groupId>org.tinyjee.jgraphx</groupId>
<artifactId>jgraphx</artifactId>
</dependency>
<dependency>
<groupId>log4j</groupId>
<artifactId>log4j</artifactId>
</dependency>
<dependency>
<groupId>org.prefuse</groupId>
<artifactId>prefuse</artifactId>
</dependency>
<dependency>
<groupId>gov.nist.math</groupId>
<artifactId>jama</artifactId>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-visualization</artifactId>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-algorithms</artifactId>
</dependency>
<dependency>
<groupId>net.sf.jung</groupId>
<artifactId>jung-graph-impl</artifactId>
</dependency>
<dependency>
<groupId>org.python</groupId>
<artifactId>jython-standalone</artifactId>
</dependency>
<dependency>
<groupId>GraphLayoutDSL</groupId>
<artifactId>GraphLayoutDSL</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
</project>
0 ...rc/graph/algorithm/AlgorithmExecutor.java → ...va/graph/algorithm/AlgorithmExecutor.java
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0 ...ry/src/graph/algorithm/ExecuteResult.java → ...n/java/graph/algorithm/ExecuteResult.java
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8 changes: 4 additions & 4 deletions ...algorithm/cycles/JohnsonSimpleCycles.java → ...algorithm/cycles/JohnsonSimpleCycles.java
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Expand Up @@ -17,10 +17,6 @@
=============================================================================*/
package graph.algorithm.cycles;

import graph.elements.Edge;
import graph.elements.Graph;
import graph.elements.Vertex;

import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
Expand All @@ -30,6 +26,10 @@
import java.util.Set;
import java.util.Stack;

import graph.elements.Edge;
import graph.elements.Graph;
import graph.elements.Vertex;

/**
* Find all simple cycles of a directed graph using the Johnson's
* algorithm.
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8 changes: 4 additions & 4 deletions ...h/algorithm/cycles/PatonSimpleCycles.java → ...h/algorithm/cycles/PatonSimpleCycles.java
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=============================================================================*/
package graph.algorithm.cycles;

import graph.elements.Edge;
import graph.elements.Graph;
import graph.elements.Vertex;

import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
Expand All @@ -29,6 +25,10 @@
import java.util.Set;
import java.util.Stack;

import graph.elements.Edge;
import graph.elements.Graph;
import graph.elements.Vertex;

/**
* Find a cycle basis of an undirected graph using the Paton's
* algorithm.
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4 changes: 2 additions & 2 deletions .../algorithm/cycles/SimpleCyclesFinder.java → .../algorithm/cycles/SimpleCyclesFinder.java
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@@ -1,11 +1,11 @@
package graph.algorithm.cycles;

import java.util.List;

import graph.elements.Edge;
import graph.elements.Graph;
import graph.elements.Vertex;

import java.util.List;

public class SimpleCyclesFinder<V extends Vertex, E extends Edge<V>> {

public SimpleCyclesFinder(){
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8 changes: 4 additions & 4 deletions .../cycles/SimpleUndirectedCyclesFinder.java → .../cycles/SimpleUndirectedCyclesFinder.java
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@@ -1,16 +1,16 @@
package graph.algorithm.cycles;

import graph.elements.Edge;
import graph.elements.Graph;
import graph.elements.Vertex;

import java.util.ArrayList;
import java.util.HashMap;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import java.util.Set;

import graph.elements.Edge;
import graph.elements.Graph;
import graph.elements.Vertex;

public class SimpleUndirectedCyclesFinder<V extends Vertex, E extends Edge<V>> {


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2 changes: 1 addition & 1 deletion ...thms/connectivity/PlanarAugmentation.java → ...thms/connectivity/PlanarAugmentation.java
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Expand Up @@ -17,10 +17,10 @@
import graph.elements.Vertex;
import graph.exception.CannotBeAppliedException;
import graph.traversal.GraphTraversal;
import graph.tree.bc.BCNodeType;
import graph.tree.bc.BCTree;
import graph.tree.bc.BCTreeEdge;
import graph.tree.bc.BCTreeNode;
import graph.tree.bc.BCNodeType;
import graph.util.Util;

/**
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