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pyranges

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  1. pyranges_1.x pyranges_1.x Public

    Pyranges: a Python framework for ultrafast sequence interval operations

    Python 39 8

  2. pyrangeyes pyrangeyes Public

    Gene visualization package for dataframe objects generated with PyRanges

    Python 3 3

  3. ruranges ruranges Public

    Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library

    Rust 29 4

  4. ncls ncls Public

    NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.

    C 224 24

  5. pyrle pyrle Public

    Numerical Run Length Encoding and Arithmetic in Cython

    Python 19 4

  6. pyranges pyranges Public

    Performant Pythonic GenomicRanges

    Python 493 50

Repositories

Showing 10 of 15 repositories
  • pyranges_1.x Public

    Pyranges: a Python framework for ultrafast sequence interval operations

    pyranges/pyranges_1.x’s past year of commit activity
    Python 39 MIT 8 10 2 Updated Jan 25, 2026
  • pyrle Public

    Numerical Run Length Encoding and Arithmetic in Cython

    pyranges/pyrle’s past year of commit activity
    Python 19 MIT 4 4 2 Updated Jan 11, 2026
  • pyranges Public

    Performant Pythonic GenomicRanges

    pyranges/pyranges’s past year of commit activity
    Python 493 MIT 50 86 (1 issue needs help) 6 Updated Jan 8, 2026
  • ruranges Public

    Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library

    pyranges/ruranges’s past year of commit activity
    Rust 29 MIT 4 5 0 Updated Dec 18, 2025
  • sorted_nearest Public

    Cython helper library for pyranges. Find nearest interval in linear time at C speed.

    pyranges/sorted_nearest’s past year of commit activity
    Cython 2 BSD-3-Clause 4 3 2 Updated Nov 30, 2025
  • pyrangeyes Public

    Gene visualization package for dataframe objects generated with PyRanges

    pyranges/pyrangeyes’s past year of commit activity
    Python 3 MIT 3 5 0 Updated Oct 1, 2025
  • benchmarks Public
    pyranges/benchmarks’s past year of commit activity
    Python 1 1 0 0 Updated Sep 22, 2025
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    pyranges/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,743 0 1 Updated Sep 12, 2025
  • ncls Public

    NCLS. Basically a static interval-tree that is silly fast for both construction and lookups. Deprecated but maintained.

    pyranges/ncls’s past year of commit activity
    C 224 BSD-3-Clause 24 11 5 Updated Jul 4, 2025
  • bamread Public

    Bam to Pandas DataFrame, quickly

    pyranges/bamread’s past year of commit activity
    Cython 13 8 3 2 Updated May 10, 2025
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