Repositories list

• ooicgsn-profile-data-formatter

  Public
  Formats profile data from mobile platforms for import into NetCDF data repositories

  Python

  •

  GNU General Public License v3.0

  •1•0•0•2•Updated Jan 29, 2026Jan 29, 2026

• amplify-storage-utils

  Public
  Abstraction and simplification of object storage APIs (e.g., S3)

  amplify-whoi

  Python

  •

  MIT License

  •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

• ifcbdb

  Public
  IFCB dashboard

  Python

  •

  MIT License

  •13•12•70•10•Updated Jan 29, 2026Jan 29, 2026

• nes-lter-api-2

  Public
  NES-LTER REST API version 2

  AGS Script

  •

  MIT License

  •0•2•3•0•Updated Jan 29, 2026Jan 29, 2026

• ifcb-rest-api

  Public
  REST API for IFCB data and products

  Python

  •0•0•0•0•Updated Jan 29, 2026Jan 29, 2026

• ooicgsn-data-tools

  Public
  OOI-CGSN tools for data analysis

  Jupyter Notebook

  •10•2•0•2•Updated Jan 27, 2026Jan 27, 2026

• PhytO-ARM

  Public
  PhytO-ARM: Phytoplankton Observing for Automated Real-time Management

  Python

  •

  GNU General Public License v3.0

  •2•1•26•5•Updated Jan 24, 2026Jan 24, 2026

• nes-lter-microzooplankton-biomass-transect

  Public
  Assembly of EDI data package for image-based measurements of microzooplankton biomass from CTD water column samples along the NES-LTER transect

  MIT License

  •0•0•0•0•Updated Jan 24, 2026Jan 24, 2026

• morphocluster

  Public
  Source code for the MorphoCluster application described in Schroeder et al. 2020

  amplify-whoi

  JavaScript

  •

  GNU General Public License v3.0

  •13•1•0•3•Updated Jan 23, 2026Jan 23, 2026

• amplify-stateless-microservice

  Public
  Stateless microservice library for rapidly provisioning AMPLIfy services with REST APIs and S3 integration.

  amplify-whoi

  Python

  •0•0•1•0•Updated Jan 22, 2026Jan 22, 2026

• nes-lter-nutrient-transect

  Public
  NES-LTER Transect cruise nutrient data package being prepared for EDI

  nes-lter-edi-packages

  MIT License

  •1•1•5•0•Updated Jan 22, 2026Jan 22, 2026

• seggpt

  Public
  Inference functions for SegGPT, a generalist segmentation model. Supports local inference and TorchServe inference.

  amplify-whoi

  Python

  •

  MIT License

  •0•3•0•5•Updated Jan 13, 2026Jan 13, 2026

• ifcb-data-sharer

  Public
  AWS-based data pipeline to share IFCB data from multiple end users to a single IFCB dashboard

  HCL

  •

  MIT License

  •0•4•0•0•Updated Jan 13, 2026Jan 13, 2026

• obs-roundabout

  Public
  OBS Roundabout Asset Tracking system

  Python

  •

  Other

  •4•0•0•0•Updated Jan 12, 2026Jan 12, 2026

• whoi-hab-hub

  Public
  Harmful Algal Bloom data API and map project

  Python

  •

  GNU General Public License v3.0

  •1•8•4•1•Updated Jan 9, 2026Jan 9, 2026

• apprill_biocomp

  Public
  Computational resources and protocols in the Apprill Lab

  HTML

  •

  Other

  •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

• amplify-prefect

  Public
  Prefect server for orchestrating AMPLIfy workflows

  amplify-whoi

  Python

  •0•0•0•0•Updated Jan 8, 2026Jan 8, 2026

• ooicgsn-asset-management

  Public
  Asset Management

  Jupyter Notebook

  •43•1•0•0•Updated Jan 8, 2026Jan 8, 2026

• ndsf-sealog-server

  Public
  NDSF edition of the Sealog event logging server

  JavaScript

  •

  MIT License

  •0•1•5•3•Updated Dec 23, 2025Dec 23, 2025

• ifcb-roi-service

  Public
  Microservice for fetching IFCB images and associated metadata

  amplify-whoi

  Python

  •1•0•0•0•Updated Dec 22, 2025Dec 22, 2025

• ndsf-sealog-client

  Public
  NDSF edition of the Sealog event logging web client

  JavaScript

  •

  MIT License

  •1•4•9•1•Updated Dec 22, 2025Dec 22, 2025

• rtsp-framegrab

  Public
  Frame grabber for RTSP video feeds

  Rust

  •

  MIT License

  •0•0•0•0•Updated Dec 21, 2025Dec 21, 2025

• amplify-object-store

  Public
  Simple CRUD object store

  amplify-whoi

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 18, 2025Dec 18, 2025

• amplify-stateful-microservice

  Public
  Microservice generation library

  amplify-whoi

  Python

  •0•0•0•1•Updated Dec 15, 2025Dec 15, 2025

• nes-lter-ims-utils

  Public
  Tools for working with data in the NES-LTER information system

  Python

  •

  MIT License

  •0•3•0•1•Updated Dec 15, 2025Dec 15, 2025

• ooi-on-bco-dmo

  Public
  Acquire data and create visualizations with OOI Discrete Water Sample summaries on BCO-DMO

  Jupyter Notebook

  •

  MIT License

  •3•2•0•4•Updated Dec 15, 2025Dec 15, 2025

• ifcb-focus-microservice

  Public
  Microservice for serving IFCB focus metrics.

  amplify-whoi

  Python

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• ifcb-focus

  Public
  Python

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• ifcb-flow-microservice

  Public
  Microservice for serving the IFCB flow metric.

  amplify-whoi

  Python

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025

• ifcb-flow-metric

  Public
  An unsupervised classification model for IFCB data detecting anomalous distributions of ROI positions

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 12, 2025Dec 12, 2025