Pontocerebellar_Connectivity: https://pmc.ncbi.nlm.nih.gov/articles/pmid/40355513/git

• Pontocerebellar_Tractography_Pipeline.ipynb contains code for performing tractography between individual cerebellar lobules and the pons.
• Maps contains resulting maps in MNI space

Corticopontine_Connectivity: https://www.sciencedirect.com/science/article/pii/S1053811922008059?via%3Dihub

• Prep_Corticopontine_ROIs.ipynb contains code for preparing cortical and pons rois for tractography
• Corticopontine_Structrural_Emedding.ipynb contains code for performing spectral embedding on corticopontine tractography based connectivity matrix
• Maps contains resulting maps in MNI space

Corticopontocerebellar_Functional: https://link.springer.com/article/10.1007/s12311-025-01943-7

• Code is adapted from https://github.com/xaviergp/cerebellum_gradients and https://github.com/yutakatsumi/gradient_correlations
• Prepare_Matrices.ipynb contains code to prepare functional connectivity matrices for gradient analysis (uses Connectome Workbench: https://www.humanconnectome.org/software/get-connectome-workbench)
• Corticopontocerebellar_2025.ipynb contains code to perform diffusion map embedding on cortico-ponto-cerebellar functional connectivity matrix.
• Gradients in the pons are generated and "projected" to cerebral and cerebellar cortices
• Employs the mapalign pacakge: https://github.com/sensein/mapalign