MokaGuys
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dnanexus_swiss_army_SNP_bcftools_filter
dnanexus_swiss_army_SNP_bcftools_filter PublicThis repository contains the commands executed by the swiss army knife app (v3.0.0) to format a VCF according to GeL specifications for SNP ID checks
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automate_demultiplex
automate_demultiplex PublicScripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
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dnanexus_happy
dnanexus_happy PublicDNAnexus app comparing a query VCF to a truth VCF to calculate performance metrics including sensitivity and precision using hap.py and vcfeval
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dnanexus_ED_cnv_calling
dnanexus_ED_cnv_calling PublicPerforms CNV calling using ExomeDepth.
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Repositories
- automate_demultiplex Public
Scripts for routine analysis of clinical next generation sequencing (NGS) data at Synnovis Genetics
moka-guys/automate_demultiplex’s past year of commit activity - seglh-multiqc Public Forked from MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
moka-guys/seglh-multiqc’s past year of commit activity - SEGLH_MultiQC Public archive
Aggregate results from bioinformatics analyses across many samples into a single report.
moka-guys/SEGLH_MultiQC’s past year of commit activity - samplesheet_validator Public
A package to validate the formatting of Illumina SampleSheets and which notifies the user of any issues
moka-guys/samplesheet_validator’s past year of commit activity - SNP_haplotyper Public
BASHer (BiAllellic SNP Haplotyper). This script filters and classifies SNPs for SNP Array data
moka-guys/SNP_haplotyper’s past year of commit activity - dnanexus_verifybamid Public
DNAnexus app which runs verifyBamID to detect sample contamination from population allele frequencies
moka-guys/dnanexus_verifybamid’s past year of commit activity - dnanexus_peddy Public
DNAnexus app running peddy v0.4.8 (https://github.com/brentp/peddy) to perform a run wide QC check that the assigned gender matches the sample
moka-guys/dnanexus_peddy’s past year of commit activity
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