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chore(deps): bump pyasn1 from 0.6.1 to 0.6.2 in the uv group across 1 directory #83

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chore(deps): bump pyasn1 from 0.6.1 to 0.6.2 in the uv group across 1 directory #83

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db77bac
chore(deps): bump pyasn1 in the uv group across 1 directory
dependabot[bot] Jan 20, 2026
a31e123
chore(ci): auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Jan 20, 2026
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2 changes: 1 addition & 1 deletion exp/2025/08/27/inverse-segement/src/20-forward.py
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import jax.numpy as jnp
import numpy as np
import pyvista as pv
from liblaf.apple.jax.typing import Vector
from loguru import logger

from liblaf import cherries, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim
from liblaf.apple.jax import sim as sim_jax
from liblaf.apple.jax.typing import Vector

jax.config.update("jax_enable_x64", True) # noqa: FBT003

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2 changes: 1 addition & 1 deletion exp/2025/08/27/inverse-segement/src/30-inverse.py
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import numpy as np
import pyvista as pv
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from loguru import logger

from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax import sim as sim_jax
from liblaf.apple.jax.typing import Scalar, Vector


class Config(cherries.BaseConfig):
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2 changes: 1 addition & 1 deletion exp/2025/08/27/inverse/src/20-forward.py
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import jax.numpy as jnp
import numpy as np
import pyvista as pv
from liblaf.apple.jax.typing import Vector
from loguru import logger

from liblaf import cherries, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim
from liblaf.apple.jax import sim as sim_jax
from liblaf.apple.jax.typing import Vector

jax.config.update("jax_enable_x64", True) # noqa: FBT003

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2 changes: 1 addition & 1 deletion exp/2025/08/27/inverse/src/30-inverse.py
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import numpy as np
import pyvista as pv
from jaxtyping import Array, Float
from liblaf.apple.jax.typing import Scalar, Vector
from loguru import logger

from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax import sim as sim_jax
from liblaf.apple.jax.typing import Scalar, Vector

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"
jax.config.update("jax_enable_x64", True) # noqa: FBT003
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2 changes: 1 addition & 1 deletion exp/2025/09/10/inverse-mixed/src/20-forward.py
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Expand Up @@ -3,12 +3,12 @@
import jax.numpy as jnp
import numpy as np
import pyvista as pv
from liblaf.apple.jax.typing import Vector
from loguru import logger

from liblaf import cherries, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim
from liblaf.apple.jax.typing import Vector
from liblaf.apple.warp import sim as sim_wp


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8 changes: 4 additions & 4 deletions exp/2025/09/10/inverse-mixed/src/30-inverse.py
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import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.sim.energy.elastic import utils
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.sim.energy.elastic import utils
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6


@lx.is_positive_semidefinite.register(lx.DiagonalLinearOperator)
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2 changes: 1 addition & 1 deletion exp/2025/09/10/inverse/src/20-forward.py
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import jax.numpy as jnp
import numpy as np
import pyvista as pv
from liblaf.apple.jax.typing import Vector
from loguru import logger

from liblaf import cherries, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim
from liblaf.apple.jax.typing import Vector
from liblaf.apple.warp import sim as sim_wp


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8 changes: 4 additions & 4 deletions exp/2025/09/10/inverse/src/30-inverse.py
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Expand Up @@ -5,21 +5,21 @@
import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Float
from liblaf.apple.jax.sim.energy.elastic import utils
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.sim.energy.elastic import utils
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6


@lx.is_positive_semidefinite.register(lx.DiagonalLinearOperator)
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8 changes: 4 additions & 4 deletions exp/2025/09/10/inverse/src/31-inverse-v2.py
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Expand Up @@ -6,21 +6,21 @@
import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.sim.energy.elastic import utils
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.sim.energy.elastic import utils
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6


@lx.is_positive_semidefinite.register(lx.DiagonalLinearOperator)
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2 changes: 1 addition & 1 deletion exp/2025/09/24/inverse-grin/src/20-forward.py
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import jax.numpy as jnp
import numpy as np
import pyvista as pv
from liblaf.apple.jax.typing import Vector
from loguru import logger

from liblaf import cherries, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim
from liblaf.apple.jax.typing import Vector
from liblaf.apple.warp import sim as sim_wp


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2 changes: 1 addition & 1 deletion exp/2025/09/24/inverse-grin/src/21-forward.py
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import jax.numpy as jnp
import numpy as np
import pyvista as pv
from liblaf.apple.jax.typing import Vector
from liblaf.peach import optim
from loguru import logger

from liblaf import cherries, melon
from liblaf.apple import sim
from liblaf.apple.jax.typing import Vector
from liblaf.apple.warp import sim as sim_wp


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8 changes: 4 additions & 4 deletions exp/2025/09/24/inverse-grin/src/30-inverse.py
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Expand Up @@ -5,21 +5,21 @@
import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"

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8 changes: 4 additions & 4 deletions exp/2025/09/24/inverse-grin/src/31-inverse.py
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Expand Up @@ -5,21 +5,21 @@
import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"

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8 changes: 4 additions & 4 deletions exp/2025/09/24/inverse-grin/src/32-inverse.py
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Expand Up @@ -5,21 +5,21 @@
import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"

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8 changes: 4 additions & 4 deletions exp/2025/09/24/inverse-grin/src/33-inverse-no-reg.py
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Expand Up @@ -5,22 +5,22 @@
import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import scipy.optimize
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"

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8 changes: 4 additions & 4 deletions exp/2025/09/24/inverse-grin/src/34-inverse-no-reg.py
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Expand Up @@ -5,21 +5,21 @@
import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"

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8 changes: 4 additions & 4 deletions exp/2025/09/24/inverse-grin/src/35-inverse-small-reg.py
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import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"

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8 changes: 4 additions & 4 deletions exp/2025/09/24/inverse-grin/src/36-inverse-abs.py
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import equinox as eqx
import jax
import jax.numpy as jnp
import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import lineax as lx
import numpy as np
import pyvista as pv
import warp as wp
from jaxtyping import Array, Bool, Float
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6
from loguru import logger

import liblaf.apple.jax.sim as sim_jax
import liblaf.apple.warp.sim as sim_wp
import liblaf.apple.warp.utils as wp_utils
from liblaf import cherries, grapes, melon
from liblaf.apple import sim
from liblaf.apple.jax import optim, tree
from liblaf.apple.jax.typing import Scalar, Vector
from liblaf.apple.warp.typing import vec6

os.environ["XLA_PYTHON_CLIENT_MEM_FRACTION"] = "0.25"

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