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@kr-colab

Kern-Ralph CoLab

Repositories associated with the collaborary research group of Andrew Kern and Peter Ralph

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  1. diploSHIC diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    Python 57 17

  2. locator locator Public

    deep learning prediction of geographic location from individual genome sequences

    Python 52 16

  3. popvae popvae Public

    genotype dimensionality reduction with a VAE

    Python 48 10

  4. ReLERNN ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    Python 66 12

  5. spaceness spaceness Public

    Space is the Place: Effects of Continuous Spatial Structure on Analysis of Population Genetic Data

    HTML 7 3

Repositories

Showing 10 of 30 repositories
  • illex Public

    Illex paper

    kr-colab/illex’s past year of commit activity
    TeX 0 0 0 0 Updated Jan 23, 2026
  • cxt Public

    Coalescence X Translation

    kr-colab/cxt’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Jan 12, 2026
  • discoal Public

    discoal is a coalescent simulation program capable of simulating models with recombination, selective sweeps, and demographic changes including population splits, admixture events, and ancient samples

    kr-colab/discoal’s past year of commit activity
    TeX 49 GPL-3.0 10 2 0 Updated Jan 7, 2026
  • ReLocator Public

    modular API for genetic geolocation using deep neural networks (i.e. version 2 of locator)

    kr-colab/ReLocator’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Dec 16, 2025
  • popgen-npe Public

    A snakemake workflow for training neural posterior estimators on population genetic data

    kr-colab/popgen-npe’s past year of commit activity
    Jupyter Notebook 4 MIT 1 1 0 Updated Dec 1, 2025
  • ReLERNN Public

    Recombination Landscape Estimation using Recurrent Neural Networks

    kr-colab/ReLERNN’s past year of commit activity
    Python 66 MIT 12 6 0 Updated Nov 30, 2025
  • diploSHIC Public

    feature-based deep learning for the identification of selective sweeps

    kr-colab/diploSHIC’s past year of commit activity
    Python 57 MIT 17 7 2 Updated Nov 17, 2025
  • disperseNN2 Public

    estimating dispersal distance from georeferenced polymorphisms

    kr-colab/disperseNN2’s past year of commit activity
    Python 4 MIT 2 7 0 Updated Aug 17, 2025
  • mapNN Public

    neural network for estimating demographic maps from SNPs

    kr-colab/mapNN’s past year of commit activity
    Python 12 MIT 1 3 0 Updated Jun 4, 2025
  • relernn_nextflow Public

    Nextflow pipeline to run ReLERNN

    kr-colab/relernn_nextflow’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Mar 21, 2025
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