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  1. Mugration-Analysis Mugration-Analysis Public

    Mugration-Analysis is a migration analysis of viral sequences using Treetime Mugration. The workflow goes from a time-scaled phylogenetic tree and metadata to region-to-region migration matrices an…

    Python

  2. Origin-and-Dispersion-of-HIV-1-Subtype-F1-in-Bahia-Northeast-Brazil Origin-and-Dispersion-of-HIV-1-Subtype-F1-in-Bahia-Northeast-Brazil Public

    This repository contains all data and analyses from the paper “Origin and dispersal of HIV-1 subtype F1 in Bahia, Northeast Brazil”, including sequences, alignments, phylogenetic trees, phylogeogra…