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@cbg-ethz

Computational Biology Group (CBG)

Beerenwinkel Lab at ETH Zurich

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  1. V-pipe V-pipe Public

    V-pipe is a pipeline designed for analysing NGS data of short viral genomes

    Jupyter Notebook 144 47

Repositories

Showing 10 of 115 repositories
  • v-pipe-scout Public

    Rapid Viral Variant Exploration and Detection - Interactive WebApp

    cbg-ethz/v-pipe-scout’s past year of commit activity
    Python 0 MIT 1 11 2 Updated Jan 13, 2026
  • hive-protocol Public

    The definitive protocol for Python in computational biology - workshop for CBG Retreat 2026

    cbg-ethz/hive-protocol’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 12, 2026
  • WisePulse Public

    WISE Loculus with V-Pipe – Infra for start-to-end viral wastewater analysis.

    cbg-ethz/WisePulse’s past year of commit activity
    Rust 5 MIT 0 36 4 Updated Jan 12, 2026
  • sr2silo Public

    Wrangling short-read sequencing data for import into SILO

    cbg-ethz/sr2silo’s past year of commit activity
    Python 1 MIT 1 6 4 Updated Jan 12, 2026
  • scDEF Public

    Deep exponential families for single-cell data.

    cbg-ethz/scDEF’s past year of commit activity
    Python 20 1 0 0 Updated Jan 11, 2026
  • CTC-SCITE Public

    Computational method and analyses to study the clonality of circulating tumor cell clusters

    cbg-ethz/CTC-SCITE’s past year of commit activity
    C++ 5 GPL-3.0 1 2 0 Updated Jan 9, 2026
  • pangolin Public

    BSSE COVID-19 sequencing of test swab samples

    cbg-ethz/pangolin’s past year of commit activity
    Shell 7 3 0 1 Updated Jan 9, 2026
  • smallgenomeutilities Public

    smallgenomeutilities is a collection of Python scripts to convert alignments between different reference genomes.

    cbg-ethz/smallgenomeutilities’s past year of commit activity
    Python 10 GPL-2.0 8 3 4 Updated Jan 5, 2026
  • covvfit Public

    Fitness estimates of SARS-CoV-2 variants

    cbg-ethz/covvfit’s past year of commit activity
    Python 2 MIT 0 3 11 Updated Jan 1, 2026
  • cowwid Public

    Procedure used for the surveillance of SARS-CoV-2, RSV and Influenza genomic variants in wastewater.

    cbg-ethz/cowwid’s past year of commit activity
    Jupyter Notebook 7 1 3 3 Updated Dec 19, 2025
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