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Additional cluster filtering by comparison to cosmic signatures to exclude clusters with high proportion of likely artefact mutations

Status: Open.

#45 In Roth-Lab/pyclone-vi;

· SanneHoe opened on Oct 20, 2025

Is there a dataset of TCGA pyclone-vi analysis result?

Status: Open.

#43 In Roth-Lab/pyclone-vi;

· ipstone opened on Nov 25, 2024

Creating Pyclone-VI input file from ASCAT and Strelka2 tool outputs

Status: Open.

#42 In Roth-Lab/pyclone-vi;

· sreerampeela opened on Oct 18, 2024

Install pyclone-vi on Galaxy Europe

Status: Open.

#41 In Roth-Lab/pyclone-vi;

· bdartigues opened on Jul 12, 2024

explain major and minor cn for pyclone input

Status: Open.

#40 In Roth-Lab/pyclone-vi;

· endertial opened on Jul 2, 2024

input data query

Status: Open.

#37 In Roth-Lab/pyclone-vi;

· bagieutopia opened on May 4, 2024

Error while running sub-command <code>fit</code>

Status: Open.

#36 In Roth-Lab/pyclone-vi;

· AntoniaChroni opened on Nov 9, 2023

How can one tell from the results whether a mutation is clonal or not?

Status: Open.

#35 In Roth-Lab/pyclone-vi;

· THT-sleepy opened on Nov 9, 2023

too less clones in results

Status: Open.

#34 In Roth-Lab/pyclone-vi;

· songmingl opened on Oct 23, 2023

Error in running example file, how to solve this error?

Status: Open.

#32 In Roth-Lab/pyclone-vi;

· parth2608 opened on Sep 5, 2023

Questions about the calculation of CCF

Status: Open.

#30 In Roth-Lab/pyclone-vi;

· huerqiang opened on Jul 1, 2023

Please add numpy version to requirements.txt

Status: Open.

#28 In Roth-Lab/pyclone-vi;

· rabiafidan opened on May 26, 2023