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@Brandes-Lab

Brandes Lab

README.md

Brandes Lab at NYU

Welcome to the Brandes Lab Github Repository!

We develop AI models for genomic analysis, leveraging protein language models (pLMs) to predict protein function, variant effects, and disease associations. Our work bridges AI and statistical genetics to identify causal variants, optimize genetic sequences, and extend AI applications to the non-coding genome.

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  1. VEP-eval VEP-eval Public

    Evaluation of multiple genomic language model for clinical VEP

    Jupyter Notebook 9 1

  2. P-KNN P-KNN Public

    Integrated calibration for variant pathogenicity prediction tools

    Jupyter Notebook 3

  3. HuggingfaceTransformer HuggingfaceTransformer Public

    Code for training huggingface transofmers

    Jupyter Notebook 1 1

  4. proteinbert_data_files proteinbert_data_files Public

    Large data files for the ProteinBERT project.

    1

  5. .github .github Public

  6. u-net u-net Public

    Python 1

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