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Fail to reproduce the results of run_base.py #60

@RogerH2018

Description

@RogerH2018

hi the paper seems very good. we want to run the py file, like run_base.py, but facing the failure as below.

when run the "predict_blockwise(val_config)", we encounter the error as:

Execution Summary

Task linajea_prediction:

num blocks : 240
completed ✔: 0 (skipped 0)
failed    ✗: 119
orphaned  ∅: 0

Failed Blocks:

  block 34 in worker 0 with exception BatchRequestError(PrintProfilingStats, providing: 
RAW: ROI: [:, :, :, :] (inf, inf, inf, inf), voxel size: (1, 5, 1, 1), interpolatable: True, non-spatial: False, dtype: <class 'numpy.float32'>, placeholder: False
CELL_INDICATOR: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False

,
RAW: ROI: [-3:4, -85:315, -50:210, -50:210] (7, 400, 260, 260), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
CELL_INDICATOR: ROI: [0:1, 0:230, 0:160, 0:160] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: [0:1, 0:230, 0:160, 0:160] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: [0:1, 0:230, 0:160, 0:160] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
, None)
block 54 in worker 0 with exception BatchRequestError(PrintProfilingStats, providing:
RAW: ROI: [:, :, :, :] (inf, inf, inf, inf), voxel size: (1, 5, 1, 1), interpolatable: True, non-spatial: False, dtype: <class 'numpy.float32'>, placeholder: False
CELL_INDICATOR: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
,
RAW: ROI: [-3:4, -85:315, -50:210, 110:370] (7, 400, 260, 260), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
CELL_INDICATOR: ROI: [0:1, 0:230, 0:160, 160:320] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: [0:1, 0:230, 0:160, 160:320] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: [0:1, 0:230, 0:160, 160:320] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
, None)
block 89 in worker 0 with exception BatchRequestError(PrintProfilingStats, providing:
RAW: ROI: [:, :, :, :] (inf, inf, inf, inf), voxel size: (1, 5, 1, 1), interpolatable: True, non-spatial: False, dtype: <class 'numpy.float32'>, placeholder: False
CELL_INDICATOR: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
,
RAW: ROI: [-3:4, -85:315, -50:210, 270:530] (7, 400, 260, 260), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
CELL_INDICATOR: ROI: [0:1, 0:230, 0:160, 320:480] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: [0:1, 0:230, 0:160, 320:480] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: [0:1, 0:230, 0:160, 320:480] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
, None)
block 145 in worker 0 with exception BatchRequestError(PrintProfilingStats, providing:
RAW: ROI: [:, :, :, :] (inf, inf, inf, inf), voxel size: (1, 5, 1, 1), interpolatable: True, non-spatial: False, dtype: <class 'numpy.float32'>, placeholder: False
CELL_INDICATOR: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
,
RAW: ROI: [-3:4, -85:315, -50:210, 430:690] (7, 400, 260, 260), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
CELL_INDICATOR: ROI: [0:1, 0:230, 0:160, 480:640] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: [0:1, 0:230, 0:160, 480:640] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: [0:1, 0:230, 0:160, 480:640] (1, 230, 160, 160), voxel size: None, interpolatable: None, non-spatial: False, dtype: None, placeholder: False
, None)
block 64 in worker 0 with exception BatchRequestError(PrintProfilingStats, providing:
RAW: ROI: [:, :, :, :] (inf, inf, inf, inf), voxel size: (1, 5, 1, 1), interpolatable: True, non-spatial: False, dtype: <class 'numpy.float32'>, placeholder: False
CELL_INDICATOR: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MAXIMA: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
MOVEMENT_VECTORS: ROI: None, voxel size: (1, 5, 1, 1), interpolatable: False, non-spatial: False, dtype: None, placeholder: False
(and 219 more)

See worker logs for details:

  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  daisy_logs/linajea_prediction/worker_0.err / .out
  ...

2025-06-17 15:07:38,741 daisy.tcp.tcp_stream ERROR No TCPStream available, can't send message.
2025-06-17 15:07:38,747 daisy.tcp.tcp_stream ERROR No TCPStream available, can't send message.
2025-06-17 15:07:38,749 daisy.tcp.tcp_stream ERROR No TCPStream available, can't send message.
2025-06-17 15:07:38,749 daisy.tcp.tcp_stream ERROR No TCPStream available, can't send message.

is the config setting correct?

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