issue with mpnn and RF3 #208
Description
My purpose is to design a protein binder. I ran mpnn on RFD3 generaed backbones, the fasta file from mpnn contains concatenated sequence (Target sequence + Binder sequence). Is this the format of fasta file that i should be getting from mpnn.? Also for running RF3 i made json file from fasta in which extracted A,B and C chains were present. The ranking scores that i got after RF3 were poor. I can't understand where i might be lacking. So can you verify? Also i'm running all the commands through CLI.