From 1b36f6f07df9345ae6e6dd937b239f2d64a3a7ab Mon Sep 17 00:00:00 2001
From: Adam Smelko <adamsmelko1@gmail.com>
Date: Mon, 9 Feb 2026 16:07:32 +0100
Subject: [PATCH 1/2] Fix worms sample project

Its custom function was dynamically changing secretion reates but they were not updated internally.
Added `set_internal_uptake_constants` to force the update.
---
 sample_projects/worm/custom_modules/custom.cpp | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/sample_projects/worm/custom_modules/custom.cpp b/sample_projects/worm/custom_modules/custom.cpp
index d8ab54473..93aab43b2 100644
--- a/sample_projects/worm/custom_modules/custom.cpp
+++ b/sample_projects/worm/custom_modules/custom.cpp
@@ -284,6 +284,7 @@ void custom_function( Cell* pCell, Phenotype& phenotype , double dt )
 		else
 		{ pCell->functions.update_migration_bias = tail_migration_direction; }
 		phenotype.secretion.secretion_rates[nSignal] = 100; 
+		pCell->set_internal_uptake_constants(diffusion_dt);
 	} 
 	
 	// if 2 or more attachments, use middle 
@@ -291,6 +292,7 @@ void custom_function( Cell* pCell, Phenotype& phenotype , double dt )
 	{
 		pCell->functions.update_migration_bias = middle_migration_direction;
 		phenotype.secretion.secretion_rates[nSignal] = 1; 
+		pCell->set_internal_uptake_constants(diffusion_dt);
 	} 
 	
 	return; 

From f5a7cef905ea5ef17e19255c52760c9cd48c55c3 Mon Sep 17 00:00:00 2001
From: Adam Smelko <adamsmelko1@gmail.com>
Date: Mon, 9 Feb 2026 16:39:18 +0100
Subject: [PATCH 2/2] Rectify test cases for worm

---
 .../output_worm-sample/snapshot00000000.svg   |    2 +-
 .../output_worm-sample/snapshot00000001.svg   |  678 +++++------
 .../output_worm-sample/snapshot00000002.svg   |  714 ++++++------
 .../output_worm-sample/snapshot00000003.svg   |  750 ++++++------
 .../output_worm-sample/snapshot00000004.svg   |  814 ++++++-------
 .../output_worm-sample/snapshot00000005.svg   |  870 +++++++-------
 .../output_worm-sample/snapshot00000006.svg   |  938 +++++++--------
 .../output_worm-sample/snapshot00000007.svg   |  966 ++++++++--------
 .../output_worm-sample/snapshot00000008.svg   |  974 ++++++++--------
 .../output_worm-sample/snapshot00000009.svg   |  994 ++++++++--------
 .../output_worm-sample/snapshot00000010.svg   | 1006 ++++++++--------
 .../output_worm-sample/snapshot00000011.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000012.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000013.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000014.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000015.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000016.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000017.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000018.svg   | 1014 ++++++++--------
 .../output_worm-sample/snapshot00000019.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000020.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000021.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000022.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000023.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000024.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000025.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000026.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000027.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000028.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000029.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000030.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000031.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000032.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000033.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000034.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000035.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000036.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000037.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000038.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000039.svg   | 1022 ++++++++---------
 .../output_worm-sample/snapshot00000040.svg   | 1022 ++++++++---------
 41 files changed, 19651 insertions(+), 19651 deletions(-)

diff --git a/tests/cases/output_worm-sample/snapshot00000000.svg b/tests/cases/output_worm-sample/snapshot00000000.svg
index 85e12f643..fd5aa2e43 100644
--- a/tests/cases/output_worm-sample/snapshot00000000.svg
+++ b/tests/cases/output_worm-sample/snapshot00000000.svg
@@ -1077,7 +1077,7 @@
   </text>
   <text x="25" y="1045"
    font-family="Arial" font-size="18.75" fill="black" >
-   0 days, 0 hours, 0 minutes, and 0.0017 seconds
+   0 days, 0 hours, 0 minutes, and 0.0051 seconds
   </text>
   <rect x="0" y="70" width="1000" height="1000" stroke-width="2" stroke="rgb(0,0,0)" fill="none"/>
   <rect x="1025" y="70" width="25" height="975" stroke-width="2" stroke="black" fill="none"/>
diff --git a/tests/cases/output_worm-sample/snapshot00000001.svg b/tests/cases/output_worm-sample/snapshot00000001.svg
index 364e0c68b..79663cd68 100644
--- a/tests/cases/output_worm-sample/snapshot00000001.svg
+++ b/tests/cases/output_worm-sample/snapshot00000001.svg
@@ -25,24 +25,24 @@
   </g>
   <g id="cells">
    <g id="cell0" type="worm" dead="false" >
-  <circle cx="156.8" cy="991.774" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="156.8" cy="991.774" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="156.8" cy="991.773" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="156.8" cy="991.773" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell1" type="worm" dead="false" >
-  <circle cx="594.971" cy="540.765" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="594.971" cy="540.765" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="594.9" cy="540.892" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="594.9" cy="540.892" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell2" type="worm" dead="false" >
-  <circle cx="629.89" cy="426.023" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="629.89" cy="426.023" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="629.983" cy="426.083" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="629.983" cy="426.083" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell3" type="worm" dead="false" >
   <circle cx="908.308" cy="422.161" r="8.41271" stroke-width="0.5" stroke="black" fill="rgb(77,77,255)"/>
   <circle cx="908.308" cy="422.161" r="5.05167" stroke-width="0.5" stroke="rgb(77,77,255)" fill="rgb(77,77,255)"/>
    </g>
    <g id="cell4" type="worm" dead="false" >
-  <circle cx="928.042" cy="346.114" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="928.042" cy="346.114" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="928.218" cy="346.325" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="928.218" cy="346.325" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell5" type="worm" dead="false" >
   <circle cx="442.577" cy="790.217" r="8.41271" stroke-width="0.5" stroke="black" fill="rgb(194,194,255)"/>
@@ -53,116 +53,116 @@
   <circle cx="559.671" cy="287.994" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
    </g>
    <g id="cell7" type="worm" dead="false" >
-  <circle cx="579.176" cy="567.598" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="579.176" cy="567.598" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="579.247" cy="567.6" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="579.247" cy="567.6" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell8" type="worm" dead="false" >
   <circle cx="150.165" cy="16.8839" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
   <circle cx="150.165" cy="16.8839" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell9" type="worm" dead="false" >
-  <circle cx="690.22" cy="388.745" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="690.22" cy="388.745" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="690.269" cy="388.422" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="690.269" cy="388.422" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell10" type="worm" dead="false" >
-  <circle cx="182.741" cy="189.839" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="182.741" cy="189.839" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="182.741" cy="189.841" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="182.741" cy="189.841" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell11" type="worm" dead="false" >
   <circle cx="257.09" cy="983.457" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
   <circle cx="257.09" cy="983.457" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell12" type="worm" dead="false" >
-  <circle cx="162.192" cy="668.781" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="162.192" cy="668.781" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="162.226" cy="668.872" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="162.226" cy="668.872" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell13" type="worm" dead="false" >
-  <circle cx="835.863" cy="174.38" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="835.863" cy="174.38" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="835.874" cy="174.394" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="835.874" cy="174.394" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell14" type="worm" dead="false" >
-  <circle cx="318.126" cy="880.262" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="318.126" cy="880.262" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="318.103" cy="880.25" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="318.103" cy="880.25" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell15" type="worm" dead="false" >
   <circle cx="419.315" cy="515.369" r="8.41271" stroke-width="0.5" stroke="black" fill="orange"/>
   <circle cx="419.315" cy="515.369" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
    </g>
    <g id="cell16" type="worm" dead="false" >
-  <circle cx="118.32" cy="758.494" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="118.32" cy="758.494" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="118.329" cy="758.44" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="118.329" cy="758.44" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell17" type="worm" dead="false" >
-  <circle cx="211.519" cy="195.017" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="211.519" cy="195.017" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="211.52" cy="195.014" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="211.52" cy="195.014" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell18" type="worm" dead="false" >
-  <circle cx="842.492" cy="860.988" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="842.492" cy="860.988" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="841.44" cy="861.395" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="841.44" cy="861.395" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell19" type="worm" dead="false" >
-  <circle cx="540.296" cy="530.018" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="540.296" cy="530.018" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="540.49" cy="530.024" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="540.49" cy="530.024" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell20" type="worm" dead="false" >
-  <circle cx="947.839" cy="796.542" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="947.839" cy="796.542" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="948.208" cy="796.072" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="948.208" cy="796.072" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell21" type="worm" dead="false" >
   <circle cx="553.398" cy="300.73" r="8.41271" stroke-width="0.5" stroke="black" fill="orange"/>
   <circle cx="553.398" cy="300.73" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
    </g>
    <g id="cell22" type="worm" dead="false" >
-  <circle cx="72.674" cy="198.305" r="8.41271" stroke-width="0.5" stroke="black" fill="red"/>
-  <circle cx="72.674" cy="198.305" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
+  <circle cx="72.6668" cy="198.177" r="8.41271" stroke-width="0.5" stroke="black" fill="red"/>
+  <circle cx="72.6668" cy="198.177" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
    </g>
    <g id="cell23" type="worm" dead="false" >
-  <circle cx="414.683" cy="889.616" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="414.683" cy="889.616" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="414.684" cy="889.616" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="414.684" cy="889.616" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell24" type="worm" dead="false" >
-  <circle cx="770.386" cy="694.481" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="770.386" cy="694.481" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="770.366" cy="694.441" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="770.366" cy="694.441" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell25" type="worm" dead="false" >
-  <circle cx="7.67292" cy="272.64" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="7.67292" cy="272.64" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="7.67658" cy="272.633" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="7.67658" cy="272.633" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell26" type="worm" dead="false" >
-  <circle cx="902.343" cy="333.163" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="902.343" cy="333.163" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="902.547" cy="333.232" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="902.547" cy="333.232" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell27" type="worm" dead="false" >
-  <circle cx="800.464" cy="600.565" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="800.464" cy="600.565" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="800.513" cy="600.311" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="800.513" cy="600.311" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell28" type="worm" dead="false" >
-  <circle cx="663.043" cy="156.469" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="663.043" cy="156.469" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="662.979" cy="156.393" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="662.979" cy="156.393" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell29" type="worm" dead="false" >
   <circle cx="486.69" cy="49.499" r="8.41271" stroke-width="0.5" stroke="black" fill="orange"/>
   <circle cx="486.69" cy="49.499" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
    </g>
    <g id="cell30" type="worm" dead="false" >
-  <circle cx="709.461" cy="737.491" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="709.461" cy="737.491" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="709.46" cy="737.566" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="709.46" cy="737.566" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell31" type="worm" dead="false" >
   <circle cx="335.061" cy="992.429" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
   <circle cx="335.061" cy="992.429" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell32" type="worm" dead="false" >
-  <circle cx="848.498" cy="663.241" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="848.498" cy="663.241" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="848.421" cy="663.024" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="848.421" cy="663.024" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell33" type="worm" dead="false" >
-  <circle cx="802.16" cy="405.906" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="802.16" cy="405.906" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="802.186" cy="405.976" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="802.186" cy="405.976" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell34" type="worm" dead="false" >
-  <circle cx="625.099" cy="99.4342" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
-  <circle cx="625.099" cy="99.4342" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="624.917" cy="99.3661" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="624.917" cy="99.3661" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
    </g>
    <g id="cell35" type="worm" dead="false" >
   <circle cx="569.488" cy="598.652" r="8.41271" stroke-width="0.5" stroke="black" fill="orange"/>
@@ -173,56 +173,56 @@
   <circle cx="741.154" cy="373.242" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
    </g>
    <g id="cell37" type="worm" dead="false" >
-  <circle cx="590.298" cy="966.961" r="8.41271" stroke-width="0.5" stroke="black" fill="orange"/>
-  <circle cx="590.298" cy="966.961" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
+  <circle cx="590.297" cy="966.961" r="8.41271" stroke-width="0.5" stroke="black" fill="orange"/>
+  <circle cx="590.297" cy="966.961" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
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diff --git a/tests/cases/output_worm-sample/snapshot00000002.svg b/tests/cases/output_worm-sample/snapshot00000002.svg
index bdf4e2802..e0157e802 100644
--- a/tests/cases/output_worm-sample/snapshot00000002.svg
+++ b/tests/cases/output_worm-sample/snapshot00000002.svg
@@ -25,144 +25,144 @@
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-  <circle cx="552.892" cy="299.739" r="5.05167" stroke-width="0.5" stroke="rgb(55,55,255)" fill="rgb(55,55,255)"/>
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-  <circle cx="8.35155" cy="271.053" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
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+  <circle cx="8.49547" cy="271.318" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
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+  <circle cx="901.763" cy="336.128" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
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+  <circle cx="798.97" cy="599.953" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
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+  <circle cx="660.619" cy="158.245" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
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+  <circle cx="706.463" cy="737.691" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
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+  <circle cx="845.762" cy="663.611" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
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-  <circle cx="799.285" cy="406.76" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
+  <circle cx="799.336" cy="406.907" r="8.41271" stroke-width="0.5" stroke="black" fill="grey"/>
+  <circle cx="799.336" cy="406.907" r="5.05167" stroke-width="0.5" stroke="grey" fill="grey"/>
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-  <circle cx="625.892" cy="102.014" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
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@@ -173,56 +173,56 @@
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+  <circle cx="590.271" cy="965.126" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
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diff --git a/tests/cases/output_worm-sample/snapshot00000003.svg b/tests/cases/output_worm-sample/snapshot00000003.svg
index 4d91b49d3..8c473b32f 100644
--- a/tests/cases/output_worm-sample/snapshot00000003.svg
+++ b/tests/cases/output_worm-sample/snapshot00000003.svg
@@ -25,144 +25,144 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000004.svg b/tests/cases/output_worm-sample/snapshot00000004.svg
index c20c0285e..004285e03 100644
--- a/tests/cases/output_worm-sample/snapshot00000004.svg
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@@ -25,144 +25,144 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000005.svg b/tests/cases/output_worm-sample/snapshot00000005.svg
index a9274f606..10ab8c7d2 100644
--- a/tests/cases/output_worm-sample/snapshot00000005.svg
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@@ -25,204 +25,204 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000006.svg b/tests/cases/output_worm-sample/snapshot00000006.svg
index 4db1cc0f7..fe8789fdf 100644
--- a/tests/cases/output_worm-sample/snapshot00000006.svg
+++ b/tests/cases/output_worm-sample/snapshot00000006.svg
@@ -25,204 +25,204 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000007.svg b/tests/cases/output_worm-sample/snapshot00000007.svg
index 117d57f58..57bc8168f 100644
--- a/tests/cases/output_worm-sample/snapshot00000007.svg
+++ b/tests/cases/output_worm-sample/snapshot00000007.svg
@@ -25,204 +25,204 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000008.svg b/tests/cases/output_worm-sample/snapshot00000008.svg
index 2a9435c36..8ef127c77 100644
--- a/tests/cases/output_worm-sample/snapshot00000008.svg
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@@ -25,208 +25,208 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000009.svg b/tests/cases/output_worm-sample/snapshot00000009.svg
index c9d057feb..15e7921a5 100644
--- a/tests/cases/output_worm-sample/snapshot00000009.svg
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@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000010.svg b/tests/cases/output_worm-sample/snapshot00000010.svg
index 804a2ddb3..7f833e6d2 100644
--- a/tests/cases/output_worm-sample/snapshot00000010.svg
+++ b/tests/cases/output_worm-sample/snapshot00000010.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000011.svg b/tests/cases/output_worm-sample/snapshot00000011.svg
index 47c929ead..453616398 100644
--- a/tests/cases/output_worm-sample/snapshot00000011.svg
+++ b/tests/cases/output_worm-sample/snapshot00000011.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000012.svg b/tests/cases/output_worm-sample/snapshot00000012.svg
index 72036eadb..4b4ad04c9 100644
--- a/tests/cases/output_worm-sample/snapshot00000012.svg
+++ b/tests/cases/output_worm-sample/snapshot00000012.svg
@@ -25,1048 +25,1048 @@
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+  <circle cx="613.893" cy="492.862" r="5.05167" stroke-width="0.5" stroke="orange" fill="orange"/>
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diff --git a/tests/cases/output_worm-sample/snapshot00000013.svg b/tests/cases/output_worm-sample/snapshot00000013.svg
index 88c05ae08..f7ce0e97a 100644
--- a/tests/cases/output_worm-sample/snapshot00000013.svg
+++ b/tests/cases/output_worm-sample/snapshot00000013.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000014.svg b/tests/cases/output_worm-sample/snapshot00000014.svg
index 8fdec4be4..74d55c2e0 100644
--- a/tests/cases/output_worm-sample/snapshot00000014.svg
+++ b/tests/cases/output_worm-sample/snapshot00000014.svg
@@ -25,1048 +25,1048 @@
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+   0 days, 0 hours, 0 minutes, and 0.3402 seconds
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diff --git a/tests/cases/output_worm-sample/snapshot00000015.svg b/tests/cases/output_worm-sample/snapshot00000015.svg
index 4acac341a..983bff395 100644
--- a/tests/cases/output_worm-sample/snapshot00000015.svg
+++ b/tests/cases/output_worm-sample/snapshot00000015.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000016.svg b/tests/cases/output_worm-sample/snapshot00000016.svg
index ad9a81923..18ba3769e 100644
--- a/tests/cases/output_worm-sample/snapshot00000016.svg
+++ b/tests/cases/output_worm-sample/snapshot00000016.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000017.svg b/tests/cases/output_worm-sample/snapshot00000017.svg
index 870ce4b25..1c8cb3105 100644
--- a/tests/cases/output_worm-sample/snapshot00000017.svg
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@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000018.svg b/tests/cases/output_worm-sample/snapshot00000018.svg
index a3f63cf6f..4ad4416fe 100644
--- a/tests/cases/output_worm-sample/snapshot00000018.svg
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@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000019.svg b/tests/cases/output_worm-sample/snapshot00000019.svg
index dc73ea07a..68d8eaaf2 100644
--- a/tests/cases/output_worm-sample/snapshot00000019.svg
+++ b/tests/cases/output_worm-sample/snapshot00000019.svg
@@ -25,1048 +25,1048 @@
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+  <circle cx="648.62" cy="499.641" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
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diff --git a/tests/cases/output_worm-sample/snapshot00000020.svg b/tests/cases/output_worm-sample/snapshot00000020.svg
index 3b04390d8..a595aa4a6 100644
--- a/tests/cases/output_worm-sample/snapshot00000020.svg
+++ b/tests/cases/output_worm-sample/snapshot00000020.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000021.svg b/tests/cases/output_worm-sample/snapshot00000021.svg
index e469a3e6b..e40293a2b 100644
--- a/tests/cases/output_worm-sample/snapshot00000021.svg
+++ b/tests/cases/output_worm-sample/snapshot00000021.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000022.svg b/tests/cases/output_worm-sample/snapshot00000022.svg
index 30417e0c0..78aa0d062 100644
--- a/tests/cases/output_worm-sample/snapshot00000022.svg
+++ b/tests/cases/output_worm-sample/snapshot00000022.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000023.svg b/tests/cases/output_worm-sample/snapshot00000023.svg
index 930dd5b19..c42698b4d 100644
--- a/tests/cases/output_worm-sample/snapshot00000023.svg
+++ b/tests/cases/output_worm-sample/snapshot00000023.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000024.svg b/tests/cases/output_worm-sample/snapshot00000024.svg
index 6b96c2b0f..3cf212fac 100644
--- a/tests/cases/output_worm-sample/snapshot00000024.svg
+++ b/tests/cases/output_worm-sample/snapshot00000024.svg
@@ -25,1048 +25,1048 @@
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+  <circle cx="652.652" cy="498.456" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
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diff --git a/tests/cases/output_worm-sample/snapshot00000025.svg b/tests/cases/output_worm-sample/snapshot00000025.svg
index d8595ac3b..80c750ffd 100644
--- a/tests/cases/output_worm-sample/snapshot00000025.svg
+++ b/tests/cases/output_worm-sample/snapshot00000025.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000026.svg b/tests/cases/output_worm-sample/snapshot00000026.svg
index 336b1bf48..4a461a87e 100644
--- a/tests/cases/output_worm-sample/snapshot00000026.svg
+++ b/tests/cases/output_worm-sample/snapshot00000026.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000027.svg b/tests/cases/output_worm-sample/snapshot00000027.svg
index 41626c086..ee86a8fd7 100644
--- a/tests/cases/output_worm-sample/snapshot00000027.svg
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@@ -25,1048 +25,1048 @@
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+  <circle cx="654.763" cy="497.684" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
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diff --git a/tests/cases/output_worm-sample/snapshot00000028.svg b/tests/cases/output_worm-sample/snapshot00000028.svg
index f500501ed..952314a5b 100644
--- a/tests/cases/output_worm-sample/snapshot00000028.svg
+++ b/tests/cases/output_worm-sample/snapshot00000028.svg
@@ -25,1048 +25,1048 @@
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-  <circle cx="619.574" cy="491.717" r="5.05167" stroke-width="0.5" stroke="rgb(145,145,255)" fill="rgb(145,145,255)"/>
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+  <circle cx="655.467" cy="497.429" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
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+   0 days, 0 hours, 0 minutes, and 0.7188 seconds
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diff --git a/tests/cases/output_worm-sample/snapshot00000029.svg b/tests/cases/output_worm-sample/snapshot00000029.svg
index 730c5c112..bfe421b8e 100644
--- a/tests/cases/output_worm-sample/snapshot00000029.svg
+++ b/tests/cases/output_worm-sample/snapshot00000029.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000030.svg b/tests/cases/output_worm-sample/snapshot00000030.svg
index 3ead1e0bb..06e317670 100644
--- a/tests/cases/output_worm-sample/snapshot00000030.svg
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@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000031.svg b/tests/cases/output_worm-sample/snapshot00000031.svg
index cf5b96334..a2e608ac8 100644
--- a/tests/cases/output_worm-sample/snapshot00000031.svg
+++ b/tests/cases/output_worm-sample/snapshot00000031.svg
@@ -25,1048 +25,1048 @@
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+  <circle cx="657.591" cy="496.691" r="5.05167" stroke-width="0.5" stroke="red" fill="red"/>
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diff --git a/tests/cases/output_worm-sample/snapshot00000032.svg b/tests/cases/output_worm-sample/snapshot00000032.svg
index 772364edc..a8056f4c4 100644
--- a/tests/cases/output_worm-sample/snapshot00000032.svg
+++ b/tests/cases/output_worm-sample/snapshot00000032.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000033.svg b/tests/cases/output_worm-sample/snapshot00000033.svg
index 37c0627c7..3ccbc8a17 100644
--- a/tests/cases/output_worm-sample/snapshot00000033.svg
+++ b/tests/cases/output_worm-sample/snapshot00000033.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000034.svg b/tests/cases/output_worm-sample/snapshot00000034.svg
index c9941c442..c6b9ff8f4 100644
--- a/tests/cases/output_worm-sample/snapshot00000034.svg
+++ b/tests/cases/output_worm-sample/snapshot00000034.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000035.svg b/tests/cases/output_worm-sample/snapshot00000035.svg
index b70730976..dce3921af 100644
--- a/tests/cases/output_worm-sample/snapshot00000035.svg
+++ b/tests/cases/output_worm-sample/snapshot00000035.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000036.svg b/tests/cases/output_worm-sample/snapshot00000036.svg
index e696f3346..40d0d29c2 100644
--- a/tests/cases/output_worm-sample/snapshot00000036.svg
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@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000037.svg b/tests/cases/output_worm-sample/snapshot00000037.svg
index eaf983cb9..cd6f46543 100644
--- a/tests/cases/output_worm-sample/snapshot00000037.svg
+++ b/tests/cases/output_worm-sample/snapshot00000037.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000038.svg b/tests/cases/output_worm-sample/snapshot00000038.svg
index 69f462aa7..c9790e13f 100644
--- a/tests/cases/output_worm-sample/snapshot00000038.svg
+++ b/tests/cases/output_worm-sample/snapshot00000038.svg
@@ -25,1048 +25,1048 @@
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-  <circle cx="623.077" cy="490.094" r="5.05167" stroke-width="0.5" stroke="rgb(146,146,255)" fill="rgb(146,146,255)"/>
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+   0 days, 0 hours, 0 minutes, and 1.0193 seconds
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diff --git a/tests/cases/output_worm-sample/snapshot00000039.svg b/tests/cases/output_worm-sample/snapshot00000039.svg
index 1b24ed55d..d2cc79a40 100644
--- a/tests/cases/output_worm-sample/snapshot00000039.svg
+++ b/tests/cases/output_worm-sample/snapshot00000039.svg
@@ -25,1048 +25,1048 @@
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diff --git a/tests/cases/output_worm-sample/snapshot00000040.svg b/tests/cases/output_worm-sample/snapshot00000040.svg
index c558b5784..0f7eeb43d 100644
--- a/tests/cases/output_worm-sample/snapshot00000040.svg
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@@ -25,1048 +25,1048 @@
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