From d6d29111fc9cf8eb2c7748cf1edcfb7ac764cecc Mon Sep 17 00:00:00 2001 From: "Leo@work" Date: Tue, 2 Dec 2025 16:25:00 +0100 Subject: [PATCH] Added word size argument to blastn query in readme --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 5c2609a..0eb8ed0 100644 --- a/README.md +++ b/README.md @@ -74,7 +74,7 @@ You will need to format the output in XML format in order to use the clermontypi ``` % makeblastdb -in my_fasta.fasta -input_type fasta -out my_fasta -dbtype nucl -% blastn -query ./data/primers.fasta -perc_identity 90 -task blastn -outfmt 5 -db my_fasta -out my_fasta.xml +% blastn -query ./data/primers.fasta -perc_identity 90 -task blastn -word_size 6 -outfmt 5 -db my_fasta -out my_fasta.xml ``` #### Clermontyping launch